The new frontier
I studied developmental pathways that regulate limb, heart, liver, and brain. I want to understand these mechanisms at the molecular level because we can solve diseases from dementia to cancer by looking at processes at the molecular level. To accomplish this, I integrated data to identify how these molecules regulate tissues at precise timepoints. I used whatever data is available and whatever model is appropriate. You can't be picky when exploring new frontiers.
Tools
Programming Languages: Python, R, SQL
Data Science: Pandas, Numpy, Scikit-learn, PyTorch, Matplotlib, Seaborn, Ggplot2, Dplyer, Bioconductor, Keras, RShiny Computational Resources: High Performance Cluster, AWS (S3, EC2, Batch, Lambda), Google Cloud Compute, Kubernetes, Docker, Argo, WDL, Nextflow, DNANexus, Git, JIRA, SQL (MySQL, Spark), noSQL (MongoDB, Amazon DynamoDB), REST API
Statistics and Machine Learning: Hypothesis Testing, Linear and Generalized Linear Modeling, Multivariate Modeling, Clustering, Dimensionality Reduction, Supervised and Unsupervised Classification, Random Forests, HMM, Kaplan-Meier
Bioinformatics Tools: Dragen, BWA, VEP, FastQC, MultiQC, Samtools, Bedtools, Seurat, Scanpy, Kalisto, DESeq2, EdgeR